Friday, December 8, 2006

daphne patient 2 - 2nd posting



Suspected Microorganism

Salmonella
One of the most common pathogens found in people who are diagnosed with diarrhea is Salmonella. Below is a brief overview of this pathogen and some of its characteristics .

Characteristics
Salmonella is a Gram-negative facultative rod-shaped bacterium in the same proteobacterial family as Escherichia coli, the family Enterobacteriaceae, trivially known as "enteric" bacteria. Salmonella is nearly as well-studied as E. coli from a structural, biochemical and molecular point of view, and as poorly understood as E. coli from an ecological point of view. Salmonellae live in the intestinal tracts of warm and cold blooded animals. Some species are ubiquitous. Other species are specifically adapted to a particular host. In humans, Salmonella are the cause of two diseases called salmonellosis: enteric fever (typhoid), resulting from bacterial invasion of the bloodstream, and acute gastroenteritis, resulting from a foodborne infection/intoxication.


Salmonella Nomenclature
The genus Salmonella is a member of the family Enterobacteriaceae, It is composed of bacteria related to each other both phenotypically and genotypically. Salmonella DNA base composition is 50-52 mol% G+C, similar to that of Escherichia, Shigella, and Citrobacter. The bacteria of the genus Salmonella are also related to each other by DNA sequence. The genera with DNA most closely related to Salmonella are Escherichia, Shigella, and Citrobacter. Similar relationships were found by numerical taxonomy and 16S ssRNA analysis.

Salmonella nomenclature has been controversial since the original taxonomy of the genus was not based on DNA relatedness, rather names were given according to clinical considerations, e.g., Salmonella typhi, Salmonella cholerae-suis, Salmonella abortus-ovis, and so on. When serological analysis was adopted into the Kauffmann-White scheme in 1946, a Salmonella species was defined as "a group of related fermentation phage-type" with the result that each Salmonella serovar was considered as a species. Since the host-specificity suggested by some of these earlier names does not exist (e.g., S. typhi-murium, S. cholerae-suis are in fact ubiquitous), names derived from the geographical origin of the first isolated strain of the newly discovered serovars were next chosen, e.g., S. london, S. panama, S. stanleyville.
Susequently it was found that all Salmonella serovars form a single DNA hybridization group, i.e., a single species composed of seven subspecies, and thenomenclature had to be adapted. To avoid confusion with the familiar names of serovars, the species name Salmonella enterica was proposed with the following names for the subspecies:
enterica I
salamae II
arizonae IIIa
diarizonae IIIb
houtenae IV
bongori V
indica VI

Each subspecies contains various serovars defined by a characteristic antigenic formula.

Since this formal Latin nomenclature may not be clearly understood by physicians and epidemiologists, who are the most familiar with the names given to the most common serovars, the common serovars names are kept for subspecies I strains, which represent more than 99.5% of the Salmonella strains isolated from humans and other warm-blooded animals. The vernacular terminology seems preferred in medical practice, e.g., Salmonella ser. Typhimurium (not italicized) or shorter Salmonella (or S.) Typhimurium.

Habitats
The principal habitat of the salmonellae is the intestinal tract of humans and animals. Salmonella serovars can be found predominantly in one particular host, can be ubiquitous, or can have an unknown habitat. Typhi and Paratyphi A are strictly human serovars that may cause grave diseases often associated with invasion of the bloodstream. Salmonellosis in these cases is transmitted through fecal contamination of water or food. Gallinarum, Abortusovis, and Typhisuis are, respectively, avian, ovine, and porcine Salmonella serovars. Such host-adapted serovars cannot grow on minimal medium without growth factors (contrary to the ubiquitous Salmonella serovars).

Ubiquitous (non-host-adapted) Salmonella serovars (e.g., Typhimurium) cause very diverse clinical symptoms, from asymptomatic infection to serious typhoid-like syndromes in infants or certain highly susceptible animals (mice). In human adults, ubiquitousi organisms are mostly responsible for foodborne toxic infections.

The pathogenic role of a number of Salmonella serovars is unknown. This is especially the case with serovars from subspecies II to VI. A number of these serovars have been isolated rarely (some only once) during a systematic search in cold-blooded animals.

Salmonella in the Natural Environment
Salmonellae are disseminated in the natural environment (water, soil, sometimes plants used as food) through human or animal excretion. Humans and animals (either wild or domesticated) can excrete Salmonella either when clinically diseased or after having had salmonellosis, if they remain carriers. Salmonella organisms do not seem to multiply significantly in the natural environment (out of digestive tracts), but they can survive several weeks in water and several years in soil if conditions of temperature, humidity, and pH are favorable.

Isolation and Identification of Salmonella
A number of plating media have been devised for the isolation of Salmonella. Some media are differential and nonselective, i.e., they contain lactose with a pH indicator, but do not contain any inhibitor for non salmonellae (e.g., bromocresol purple lactose agar). Other media are differential and slightly selective, i.e., in addition to lactose and a pH indicator, they contain an inhibitor for nonenterics (e.g., MacConkey agar and eosin-methylene blue agar).

The most commonly used media selective for Salmonella are SS agar, bismuth sulfite agar, Hektoen enteric (HE) medium, brilliant green agar and xylose-lisine-deoxycholate (XLD) agar. All these media contain both selective and differential ingredients and they are commercially available.

Media used for Salmonella identification are those used for identification of all Enterobacteriaceae. Most Salmonella strains are motile with peritrichous flagella, however, nonmotile variants may occur occasionally. Most strains grow on nutrient agar as smooth colonies, 2-4 mm in diameter. Most strains are prototrophs, not requiring any growth factors. However, auxotrophic strains do occur, especially in host-adapted serovars such as Typhi and Paratyphi A.

Pathogenesis of Salmomella Infections in Humans
Salmonella infections in humans vary with the serovar, the strain, the infectious dose, the nature of the contaminated food, and the host status. Certain serovars are highly pathogenic for humans; the virulence of more rare serovars is unknown. Strains of the same serovar are also known to differ in their pathogenicity. An oral dose of at least 105Salmonella Typhi cells are needed to cause typhoid in 50% of human volunteers, whereas at least 109 S. Typhimurium cells (oral dose) are needed to cause symptoms of a toxic infection. Infants, immunosuppressed patients, and those affected with blood disease are more susceptible to Salmonella infection than healthy adults.

In the pathogenesis of typhoid the bacteria enter the human digestive tract, penetrate the intestinal mucosa (causing no lesion), and are stopped in the mesenteric lymph nodes. There, bacterial multiplication occurs, and part of the bacterial population lyses. From the mesenteric lymph nodes, viable bacteria and LPS (endotoxin) may be released into the bloodstream resulting in septicemia Release of endotoxin is responsible for cardiovascular “collapsus and tuphos” (a stuporous state—origin of the name typhoid) due to action on the ventriculus neurovegetative centers.

Salmonella excretion by human patients may continue long after clinical cure. Asymptomatic carriers are potentially dangerous when unnoticed. About 5% of patients clinically cured from typhoid remain carriers for months or even years. Antibiotics are usually ineffective on Salmonella carriage (even if salmonellae are susceptible to them) because the site of carriage may not allow penetration by the antibiotic.

Salmonellae
survive sewage treatments if suitable germicides are not used in sewage processing. In a typical cycle of typhoid, sewage from a community is directed to a sewage plant. Effluent from the sewage plant passes into a coastal river where edible shellfish (mussels, oysters) live. Shellfish concentrate bacteria as they filter several liters of water per hour. Ingestion by humans of these seafoods (uncooked or superficially cooked) may cause typhoid or other salmonellosis. Salmonellae do not colonize or multiply in contaminated shellfish.

Typhoid is strictly a human disease.The incidence of human disease decreases when the level of development of a country increases (i.e., controlled water sewage systems, pasteurization of milk and dairy products). Where these hygienic conditions are missing, the probability of fecal contamination of water and food remains high and so is the incidence of typhoid.

Foodborne Salmonella toxic infections are caused by ubiquitous Salmonella serovars (e.g., Typhimurium). About 12-24 hours following ingestion of contaminated food (containing a sufficient number of Salmonella), symptoms appear (diarrhea, vomiting, fever) and last 2-5 days. Spontaneous cure usually occurs.

Salmonella
may be associated with all kinds of food. Contamination of meat (cattle, pigs, goats, chicken, etc.) may originate from animal salmonellosis, but most often it results from contamination of muscles with the intestinal contents during evisceration of animals, washing, and transportation of carcasses. Surface contamination of meat is usually of little consequence, as proper cooking will sterilize it (although handling of contaminated meat may result in contamination of hands, tables, kitchenware, towels, other foods, etc.). However, when contaminated meat is ground, multiplication of Salmonella may occur within the ground meat and if cooking is superficial, ingestion of this highly contaminated food may produce a Salmonella infection. Infection may follow ingestion of any food that supports multiplication of Salmonella such as eggs, cream, mayonnaise, creamed foods, etc.), as a large number of ingested salmonellae are needed to give symptoms. Prevention of Salmonella toxic infection relies on avoiding contamination (improvement of hygiene), preventing multiplication of Salmonella in food (constant storage of food at 4°C), and use of pasteurized and sterilized milk and milk products. Vegetables and fruits may carry Salmonella when contaminated with fertilizers of fecal origin, or when washed with polluted water.

The incidence of foodborne Salmonella infection/toxication remains reletavely high in developed countries because of commercially prepared food or ingredients for food. Any contamination of commercially prepared food will result in a large-scale infection. In underdeveloped countries, foodborne Salmonella intoxications are less spectacular because of the smaller number of individuals simultaneously infected, but also because the bacteriological diagnosis of Salmonella toxic infection may not be available. However, the incidence of Salmonella carriage in underdeveloped countries is known to be high.

Salmonella epidemics may occur among infants in pediatric wards. The frequency and gravity of these epidemics are affected by hygienic conditions, malnutrition, and the excessive use of antibiotics that select for multiresistant strains.

Salmonella Enteritidis Infection
Egg-associated salmonellosis is an important public health problem in the United States and several European countries. Salmonella Enteritidis, can be inside perfectly normal-appearing eggs, and if the eggs are eaten raw or undercooked, the bacterium can cause illness. During the 1980s, illness related to contaminated eggs occurred mosy frequently in the northeastern United States, but now illness caused by S. Enteritidis is increasing in other parts of the country as well.

Unlike eggborne salmonellosis of past decades, the current epidemic is due to intact and disinfected grade A eggs. Salmonella Enteritidis silently infects the ovaries of healthy appearing hens and contaminates the eggs before the shells are formed. Most types of Salmonella live in the intestinal tracts of animals and birds and are transmitted to humans by contaminated foods of animal origin. Stringent procedures for cleaning and inspecting eggs were implemented in the 1970s and have made salmonellosis caused by external fecal contamination of egg shells extremely rare. However, unlike eggborne salmonellosis of past decades, the current epidemic is due to intact and disinfected grade A eggs. The reason for this is that Salmonella Enteritidis silently infects the ovaries of hens and contaminates the eggs before the shells are formed.

Although most infected hens have been found in the northeastern United States, the infection also occurs in hens in other areas of the country. In the Northeast, approximately one in 10,000 eggs may be internally contaminated. In other parts of the United States, contaminated eggs appear less common. Only a small number of hens seem to be infected at any given time, and an infected hen can lay many normal eggs while only occasionally laying an egg contaminated with Salmonella Enteritidis.

A person infected with the Salmonella Enteritidis usually has fever, abdominal cramps, and diarrhea beginning 12 to 72 hours after consuming a contaminated food or beverage. The illness usually lasts 4 to 7 days, and most persons recover without antibiotic treatment. However, the diarrhea can be severe, and the person may be ill enough to require hospitalization. The elderly, infants, and those with impaired immune systems (including HIV) may have a more severe illness. In these patients, the infection may spread from the intestines to the bloodstream, and then to other body sites and can cause death unless the person is treated promptly with antibiotics.

Exotoxins
Salmonella strains may produce a thermolabile enterotoxin that bears a limited relatedness to cholera toxin both structurally and antigenically. This enterotoxin causes water secretion in rat ileal loop and is recognized by antibodies against both cholera toxin and the thermolabile enterotoxin (LT) of enterotoxinogenic E. coli, but it does not bind in vitro to ganglioside GM1 (the receptor for E. coli LT and cholera ctx). Additionally, a cytotoxin that inhibits protein synthesis and is immunologically distinct from Shiga toxin has been demonstrated. Both of these toxins are presumed to play a role in the diarrheal symptoms of salmonellosis.

Antibiotic Susceptibility
During the last decade, antibiotic resistance and multiresistance of Salmonella spp. have increased a great deal. The cause appears to be the increased and indiscriminate use of antibiotics in the treatment of humans and animals and the addition of growth-promoting antibiotics to the food of breeding animals. Plasmid-borne antibiotic resistance is very frequent among Salmonella strains involved in pediatric epidemics (e.g., Typhimurium, Panama, Wien, Infantis). Resistance to ampicillin, streptomycin, kanamycin, chloramphenicol, tetracycline, and sulfonamides is commonly observed. Colistin resistance has not yet been observed.

Additional Info

Background: First described in 1880 and cultured in 1884, salmonellae are motile, gram-negative, rod-shaped bacteria of the family Enterobacteriaceae. Named after Daniel E. Salmon, the pathologist who first isolated the organism from porcine intestine, salmonellae are common in the gastrointestinal tracts of mammals, reptiles, birds, and insects.
As with the closely related bacterium Escherichia coli, salmonellae are potential enteric pathogens and a leading cause of bacterial food-borne illness. Additionally, salmonellae have been implicated in a spectrum of other diseases, including enteric or typhoid fever (primarily Salmonella typhi and Salmonella paratyphi), bacteremia, endovascular infections, focal infections (eg, osteomyelitis), and enterocolitis (typically Salmonella typhimurium, Salmonella enteritidis, and Salmonella heidelberg).
All salmonellae are grouped into a single overarching species. This species, Salmonella choleraesuis, is divided into 7 subgroups based on DNA homology and host range. Most of the salmonellae that are pathogenic in humans belong to a single subgroup (subgroup I). Additionally, each of the salmonellae can be serotyped according to their particular complement of somatic O, surface Vi, and flagellar H antigens. Presently, more than 2,300 Salmonella serovars exist.
Salmonellae can be isolated in the microbiology laboratory using a number of low-selective media (MacConkey agar, deoxycholate agar), intermediate-selective media (Salmonella-Shigella [SS] agar, Hektoen [HE] agar), and highly selective media (selenite agar with brilliant green). Individual isolates can then be distinguished by serotyping, bacteriophage typing, and genotyping.

Pathophysiology: The transmission of salmonellae to a susceptible host usually occurs by consumption of contaminated foods. The most common sources of salmonellae are beef, poultry, and eggs. In one recent estimate, consumption of egg shell fragments contaminated with Salmonella enterica serovar Enteritidis was responsible for approximately 182,060 cases of enteritis in the United States in the year 2000. Improperly prepared fruits, vegetables, dairy products, and shellfish have also been implicated as sources of Salmonella. Moreover, human-to-human and animal-to-human transmission can occur. For example, amphibian and reptile exposure is associated with approximately 74,000 Salmonella infections annually in the United States. Recently, cats have also been implicated as a potential reservoir.
Although the infectious dose varies among strains, a large inoculum is thought to be necessary to overcome stomach acidity and to compete with normal intestinal flora. Large inocula are also associated with higher rates of illness and shorter incubation periods. However, lower infectious doses may be adequate to cause infection if these organisms are co-ingested with foods that rapidly transit the stomach (eg, liquids) or that raise gastric pH (eg, cheese, milk), if antacids are used concomitantly, or if these organisms are ingested by individuals with impaired immune systems.
After ingestion, infection with salmonellae is characterized by attachment of the bacteria by fimbriae or pili to cells lining the intestinal lumen. Salmonellae selectively attach to specialized epithelial cells (M cells) of the Peyer patches. The bacteria are then internalized by receptor-mediated endocytosis and transported within phagosomes to the lamina propria, where they are released. Once there, salmonellae induce an influx of macrophages (typhoidal strains) or neutrophils (nontyphoidal strains). Although nontyphoid salmonellae generally precipitate a localized response, S typhi and other especially virulent strains invade deeper tissues via lymphatics and capillaries and elicit a major immune response.
Virulence factors of salmonellae are complex and encoded both on the organism's chromosome and on large (34-120 kd) plasmids. Some areas of active investigation include the means by which salmonellae attach to and invade the intestine, survive within phagosomes, effect a massive efflux of electrolytes and water into the intestinal lumen, and develop drug resistance. Several Salmonella pathogenicity islands have been identified that mediate uptake of the bacteria into epithelial cells (type III secretion system [TTSS]), nonphagocytic cell invasion (Salmonella pathogenicity-island 1 [SPI-1]), and survival and replication within macrophages (Salmonella pathogenicity-island 2 [SPI-2], phoP/phoQ).
The severity of illness in individuals infected with salmonellae is determined not only by the virulence factors of the infecting strain but by host properties as well. For example, individuals at the extremes of age (ie, people who are very young or very old) are at an increased risk for bacteremia. Similarly, systemic lupus erythematosus, malignancies, and immune deficiency are also associated with increased risk of bacteremia.

History: salmonella infections typically produce 1 of 3 distinct syndromes: gastroenteritis, typhoid (enteric) fever, or focal disease.
Infection with nontyphoidal salmonellae usually causes enterocolitis similar to that caused by other bacterial enteric pathogens.
Nausea, vomiting, and diarrhea occur within 6-48 hours after ingestion of contaminated food or drink.
In most cases, stools are loose and bloodless. Salmonellae may rarely cause large-volume choleralike diarrhea or may be associated with tenesmus.
The diarrhea is typically self-limiting and resolves within 3-7 days.
While an initial transient diarrhea may occur, established infections with S typhi or S paratyphi are associated with abdominal pain and either constipation (~40%) or recurrent diarrhea (~40%).
Fever, abdominal cramping, chills, headache, and myalgia are common.
Fever usually resolves within 48 hours.
Enteric fever (typically caused by S typhi or S paratyphi) is generally an acute illness manifested by fever, headache, and abdominal symptoms and should be considered in travelers returning from tropical and subtropical areas.
Focal disease is variable and defined by the site of infection.

Physical: Patients with Salmonella gastroenteritis typically have a self-limiting fever (38-39°C) within 48 hours of ingestion. A prolonged persistent fever (4-8 wk in untreated individuals) that increases daily (as high as 41°C) suggests typhoid fever. Nontyphoidal gastroenteritis is generally limited to diarrhea, although typhoid (enteric) fever may present with both gastrointestinal and skin manifestations (ie, rose spots). The following organ systems may be involved with Salmonella infection:
Gastrointestinal: Salmonella infections typically cause nonbloody loose stool or watery diarrhea. Abdominal tenderness (~50%) and mild hepatosplenomegaly (~50%) are both common in patients with typhoid fever.
Cardiovascular: Salmonella infections (commonly S typhimurium or S choleraesuis) may produce arterial infections or endocarditis.
Pulmonary: Salmonella pneumonia or empyema is rare in the absence of comorbid illnesses such as underlying lung disease, malignancy, diabetes, sickle cell anemia, or alcohol abuse.
Genitourinary: Individuals with urolithiasis or structural abnormalities or individuals who are undergoing immunosuppressive therapy are predisposed to Salmonella urinary tract infections.
Neurologic: Salmonella meningitis may rarely occur, typically in infants and young children.
Skeletal: Infection with salmonellae may cause septic arthritis and osteomyelitis. The latter affects the long bones and typically occurs in patients with sickle cell disease.
Integument: Enteric fever may be associated with pink, blanchable, slightly raised macules (rose spots) on the chest and abdomen.


The causative agent of typhoid fever is the bacterium Salmonella typhi. (Image courtesy of the Centers for Disease Control and Prevention

References:
>medlineplus>>ency>>imagepages>>1048.htm">http>>www.nlm.nih.gov>>medlineplus>>ency>>imagepages>>1048.htm
>MED>>topic2058.htm">http>>www.emedicine.com>>MED>>topic2058.htm

Patient 1 Khong Fay Fay

Bacteria are the primary organisms that cause UTIs, mostly one called Escherichia coli (E. coli).

Cystitis is the most common urinary tract infection and is sometimes referred to as acute uncomplicated UTI. It occurs in the lower urinary tract (the bladder and urethra) and nearly always in women.

Bacterial Strains in Acute Uncomplicated UTI(cystitis). The bacterial strains likely to cause acute uncomplicated UTI are the following:

  • E. coli. is responsible for between 72% and 85% of cystitis cases in younger women, and more than 50% in women over 50. In most cases of UTI, E. coli, which originates as a harmless micro-organism in the intestines, spreads to the vaginal passage, where it invades and colonizes the urinary tract. One study suggests that even when infected cells lining the bladder die and slough off, carrying the E. coli bacteria with them, some bacteria can invade into deeper tissue in the bladder, where they survive to reinfect the patient later on.
  • Staphylococcus saprophyticus may be another common culprit, especially in younger women. Interestingly, infections caused by this bacteria have a seasonal variation, with a higher incidence in the summer and fall than in the winter and spring.
  • Klebsiella and enterococci bacteria are often found in UTIs in older women.
  • Proteus mirabilis is the other common bacterium associated with these infections.
  • Pseudomonas aeruginosa is a rare bacterial cause and is most often detected in hospital-acquired UTIs. Since this patient is not admitted, this organism is ruled out.
  • Some evidence suggests that Ureaplasma urealyticum and Mycoplasma hominis, which are generally harmless organisms, may be responsible for occasional urinary tract disorders.
Organisms in Complicated Infections
  • Complicated UTIs, which are related to physical or structural conditions, are apt to be caused by a wider range of organism. E. coli is still the most common organism, but others have also been detected, including the following: Other intestinal bacteria, including klebsiella, P. mirabilis, and citrobacter.
  • Fungal organisms, particularly candida species. (Candida albicans, for example, causes the "yeast infections" that also occur in the mouth, digestive tract, and vagina.)
  • Others include Pseudomonas aeruginosa, enterobacter, and serratia species; gram-positive organisms, including enterococcus species; and S. saprophyticus.

From the above most common organisms that are found in the Urinary Tract Infection the ones that are suspected are as follows ;
  • Escherichia Coli
  • Staphylococcus saprophyticus
  • Proteus mirabilis
  • Ureaplasma urealyticum and Mycoplasma hominis (she could be sexually-active)
Taken from ( http://www.icaa.cc/WCI/articles/000036_2.htm)

Tests done to confirm the identity of the organism

A midstream urine specimen of 2 – 15 ml should be collected in a sterile plastic wide-mouthed container.

Dipstick tests are increasingly used to obtain a diagnosis of UTIs and are now available in drug stores without a prescription. The test employ a chemical that reacts to nitrites, substances produced by many of the bacteria that cause UTIs. This chemical is available on a stick that is dipped into a urine sample. In women with symptoms, the dipstick is proving to be a quick and practical way to identify most cases of infection.

A urinalysis involves a physical and chemical examination of urine. In addition, the urine is spun in a centrifuge to allow sediments containing blood cells, bacteria, and other particles to collect. This sediment is then examined under a microscope. A urinalysis, then, offers a number of valuable clues for an accurate diagnosis:

  • Simply observing the urine for color and cloudiness can be important.
  • Acidity is measured.
  • White blood cells (leukocytes) are counted. A high count in the urine is referred to as pyuria. (A leukocyte count of over 10 per microliter of urine indicates pyuria.) Pyuria is usually sufficient for a diagnosis of UTI in nonhospitalized patients if standard symptoms (or just fever in small children) are also present.
A urine culture is a urine specimen observed for 24 to 48 hours in a laboratory for the presence of any bacterial growth. This is done by observing for the growth of any bacteria present in the urine using various culture plates. The plates usually used in the growth are Blood, MacConkey, CLED agar. They are support the growth of microrganisms mainly from the urine. Usually, one type of bacteria is observed. When more than one type of organism is present, it is usually due to contamination. When the presence of bacteria is confirmed, additional tests are done to confirm the identity of the bacteria. Eg(Gram-stain, catalase,coagulase, indole,oxidase,using MICROBACT)




Thursday, December 7, 2006

Patient 4-Ng Ming En (Nora)

Patient 4-Ng Ming En
Complaints: Severe vomiting, diarrhea, abdominal cramps
Diagnosis: Food poisoning

Food Poisoning is the result of eating organisms or toxins in contaminated food. Based on the patient’s complaints, the food poisoning can be caused by these microorganisms: Staphylococcus aureus, Vibrio cholerae, and Bacillus cereus.

1. S. aureus
•Normally found in ham, poultry, egg dishes, and pastries.
•S. aureus food poisoning is often caused when a food handler contaminates food products that are served or stored at room temperature. After the staphylococci have been introduced into the food, the food must remain at room temperature or warmer for the organisms to grow and release the toxin. Subsequent heating of the food will kill the bacteria but not inactivate the heat stable toxin.
•There are multiple enterotoxins: A-E, G-I, K-. The enterotoxins are heat stable and resistant to the action of gut enzymes. The enterotoxins is preformed in foods and has a short incubation period (1-8 hours)
•S. aureus food poisoning is characterized by severe vomiting, watery diarrhea, and abdominal pain. The emetic effect of enterotoxins is probably the result of central nervous system stimulation after the toxin acts on the neuron receptors in the guts. The enterotoxins genes will interact with accessory genetic elements (bacteriophages) to produce the toxins.
•Specimens are cultured on BAP at 370C for at least 18 hours. Young cocci stain strongly positive, on aging, many become negative. S. aureus produce catalase and coagulase.
•Susceptibility testing: resistance to Penicillin G can be predicted by a positive test for Beta-lactamase. Resistance to nafcillin and methicillin occurs in about 20%.
S. aureus on BAP (http://www2.umdnj.edu)
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2. V. cholerae
•Normally found in shellfish
•When V. cholerae is ingested, it will colonies the small intestine.
•It is a non-invasive and causes disease by producing enterotoxins, called choleragen (heat labile toxin). These toxins can cause watery diarrhea (rice-waster stool). This is because the toxins will result in excess secretion of calcium ions into the intestinal lumen. Water, sodium, potassium and bicarbonate all follow due to concentration and electrical gradients.
•V. cholerae is a gram negative bacilli, and when a smear is done, dark field or phase contrast microscopy may show the rapidly motile Vibrio
•Specimen is to be cultured on TCBS; forms yellow colonies that are readily visible against the dark green background of the agar. For enrichment, a few drops of stool can be incubated for 6-8 hours in taurocholate-peptone broth (pH 8.0-9.0). And this can be used for staining and subculturing. V. cholera is oxidase positive.
•Confirmatory test: further identified by slide agglutination tests using anti-O group 1 antisera.
V. cholerae on TCBS (http://www.chp.gov.hk):
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B. cereus
-associated with the consumption of cereals and cooked food (Chinese fried rice syndrome)
•Food poisoning caused by B. cereus has 2 distinct forms: the emetic type and the diarrheal type. The emetic type begins 1-5hours after ingestion of rice. When rice are cooked and allowed to cool slowly, the B. cereus spores germinate and the vegetative cells produce the toxins during log phase growth or during sporulation. The diarrheal form has an incubation period of 1-24 hours. The enterotoxin may be preformed in the food or produced in the intestine.
•Specimen is to be cultured on BAP. Strong Beta-hemolysis and irregular colonies are noted. B. cereus is catalase positive, and can be non-motile or motile.spore-forming, facultatively anaerobic rod.

•B. cereus can also be confirmed using immunological detection (http://www.rci.rutgers.edu)
click on this link: http://i17.tinypic.com/2mowfg6.jpg


Bacillus cereus on BAP (http://en.wikipedia.org)
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References:
1. Brooks, G. F., Butel, J. S. & Ornston, L. N.; “Jawetz, Melnick & Adeberg’s Medical Microbiology”
2. Patrick R. Murray, Ken S. Rosenthal, George S. Kobayashi, Micheal A. PFaller.; "Medical Microbiology"
3. Monica Gandhi, Paul Baun, C Bradley Hare, Aaron B Caughey.; "Microbiology and Immunology"

Poated by Nora

Additional Information

Food poisoning

Viral infections make up perhaps one third of cases of food poisoning in developed countries (In the US more than 50% of cases are viral). They are usually of intermediate (1-3 days) incubation period, cause illnesses which are self-limited in otherwise healthy individuals, and are similar to the bacterial forms described above.

1)Rotavirus
2)Norovirus (formerly Norwalk virus)
3)Rotavirus
4)Hepatitis A (distinguished from other viral causes by its prolonged (2-6 week) incubation period and its ability to spread beyond the stomach and intestines, into the liver)
5)Hepatitis E

Source http://en.wikipedia.org/wiki/Food_poisoning

posted by JT

Patient 5 Continued..

- Winnie-

For this week, I am going to elaborate on some of the keywords mentioned in my previous entry and in addition, suspected micro-organisms will also be listed down, including the tests to be done and the expected results.

(a) Urethritis
Urethritis is inflammation of the urethra from any cause, which may include bacteria or a virus. The same bacteria that cause UTI (E. coli) and some sexually transmitted diseases (chlamydia, gonorrhea) can lead to urethritis. Viral causes of urethritis include herpes simplex virus and cytomegalovirus.

Source: (http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > U > Urethritis)

(b) Cystitis (Recurrent)
Recurrent cystitis consists of at least 2 infections of the bladder in 6 months, or 3 infections in 1 year. It is confirmed by tests that show the growth of bacteria in the urine.Recurrent cystitis is most often caused E. coli, the leading cause of all UTIs. About 25-50% of all young, healthy women who suffer their first infection will develop a second one within 6 months. Although the risk for cystitis increases with age, the incidence of recurrent infections is only about 10-20% for people over 60.

Source:
(http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > Cp-Cz > Recurrent Cystitis)

(c) Pyelonephritis
Pyelonephritis is an infection of the kidney and the ducts that carry urine away from the kidney (ureters). It often occur as a result of UTI particularly in the presence of occasional or persistent backflow of urine from the bladder into the ureters or kidney pelvis.

Source:
(http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > Pm- Pz > Pyelonephritis)

(d) Asymptomatic UTI
When a person has no symptoms of infection but significant numbers of bacteria have colonized the urinary tract, the condition is called asymptomatic UTI (also called asymptomatic bacteriuria). (In general, there must be at least 100,000 bacteria per milliliter of urine.) The condition is harmless in most people and rarely persists, although it does increase the risk for developing symptomatic UTIs. Asymptomatic bacteriuria may be an indicator for serious health problems in the elderly, but screening for the condition is not warranted in this group.

(e) Complicated UTI
Complicated infections, which occur nearly as often in men as women, are also caused by bacteria but they occur as a result of some anatomical or structural abnormality. Often they are associated with catheter use in the hospital setting, bladder and kidney dysfunction, or kidney transplant (especially in the first three months after transplant). Recurrences occur in up to 50% to 60% of patients with complicated UTI if the underlying structural or anatomical abnormalities are not corrected.

Source:
http://www.morehead.org/wellconnected/000036.htm

The micro-organisms suspected are Escherichia coli ( E. Coli) and Proteus Mirabilis respectively.
(1)
Escherichia Coli
E. coli
are facultatively anaerobic gram-negative rods that live in the intestinal tracts of animals and humans . They can grow in the presence or the absence of oxygen. Under anaerobic conditions, E. coli grow by fermentation, producing mixed acids and gases as end products. They can also grow by anaerobic respiration, utilizing NO3, NO2, or fumarate. This versatility is what gives E. coli its ability to adapt to its intestinal (anaerobic) and its extraintestinal (aerobic or anaerobic) habitats.

Source: (
http://www.answers.com/main/ > Directory > Health > Encylcopedia of Health > E.Coli)

(1.1) Tests/ Expected Results
- Methly Red Positive and VogUes-Proskauer Negative
- Oxidase Negative
- Catalase Positive

Oxidase Test, Catalase Test

Source: http://biology.fullerton.edu/biol302/302labf99/biochem.html

(2)
Proteus Mirabilis
Proteus Mirabilis
is a Gram- Negative, facultatively anaerobic bacterium. It shows swarming. motility and urease activity. P. mirabilis causes 90% of all 'Proteus' infections. It belongs to the Tribe Proteae.

(2.1) Diagnosis
An alkaline urine sample is a possible sign of P. mirabilis, which can be diagnosed in the lab due to characteristic swarming motility, and inability to metabolize lactose.

(2.2) Characteristics
P. mirabilis can utilize Urea and Citrate. It can produce Hydrogen Sulfide gas, and forms clear films on growth media. It is motile, possessing peritrichous flagella, and is known for its swarming ability. It is commonly found in the intestinal tract of humans.

(2.3) Tests/ Expected Results
- Indole Negative and Nitrogen Reductase Positive
- Methyl Red Positive and Vogues-Proskauer Negative
- Catalase Positive and Cytochrome Oxidase Negative
- Phenylalanine Deaminase positive

Source: (
http://www.answers.com/main/ > Directory > References > Wikipedia > Proteus Mirabilis)


Indole Test, Methyl Red, Vogues- Proskauer (in order)

JUSTIFICATION
E. Coli accounts for <= 70% of bacteriuria in elderly female outpatients with uncomplicated sporadic cystitis and for about 40% in patients with indwelling bladder catheters, complicated infections, or nosocomial infections. P.mirabilis are more common in men than in women because these species tend to dominate the normal aerobic preputial flora.

Monday, December 4, 2006

Patient 1








Source: http://kidney.niddk.nih.gov/kudiseases/pubs/utiadult/

Introduction

The urinary system consists of the kidneys, ureters, bladder, and urethra. The key elements in the system are the kidneys, a pair of purplish-brown organs located below the ribs toward the middle of the back. The kidneys remove excess liquid and wastes from the blood in the form of urine, keep a stable balance of salts and other substances in the blood, and produce a hormone that aids the formation of red blood cells. Narrow tubes called ureters carry urine from the kidneys to the bladder, a sack-like organ in the lower abdomen. Urine is stored in the bladder and emptied through the urethra. (http://kidney.niddk.nih.gov/kudiseases/pubs/utiadult/)

One woman in five develops a UTI during her lifetime. Women tend to get them more often because their urethra is shorter and closer to the anus. UTIs in men are not as common as in women but can be very serious when they do occur.

Bacterial UTIs can be classified according to localization as urethritis (inflammation of the urethra), cystitis (inflammation of the bladder), or pyelonephritis (inflammation of the kidney).

Causes

Usually urine is sterile, free from fungi, bacteria or viruses. An infection only occurs after microbes, usually bacteria present in the gut manage to cling onto the urethra and begin to multiply.

Escherichia (E.) coli is responsible for between 75% and 90% of uncomplicated cystitis cases in younger women and in more than half the cases in older women. Staphylococcus saprophyticus accounts for 5% to 15% of UTIs, mostly in younger women. Klebsiella, Enterococci bacteria, and Proteus mirabilis account for most of remaining bacterial agents that cause UTIs. They are generally found in UTIs in older women.

Rare bacterial causes of UTIs include ureaplasma urealyticum and Mycoplasma hominis, which are generally harmless organisms.

Organisms responsible for UTI:
  • Bacteria
    • Escherichia coli
    • Proteus mirabilis
    • Klebsiella
    • Pseudomonas aeruginosa
    • Serratia
    • Enterobacter
    • Staphylococcus epidermis
    • Enteroccocus
    • Salmonella typhi
    • Mycobacterium tuberculosis
    • Staphylococcus aureus
  • Viruses
    • Polyomavirus JC
    • Polyomavirus BK
    • Cytomegalovirus
    • Adenovirus
  • Fungi
    • Candida albicans and other Candida spp.
    • Histoplasma capsulatum

Source : http://everything2.com/index.pl?node=urinary%20tract%20infection

Sample Collection

A midstream urine specimen of 2 – 15 ml should be collected in a sterile plastic wide-mouthed container. It should reach the laboratory within 2 hours of collection; otherwise refrigeration (for up to 24 hours) is advised. Relevant clinical information should be provided along with the patient sample.

Diagnosing

UFEME

The urine specimen must first be dip tested for the presence of blood cells, both erythrocytes and leukocytes, nitrates and protein. It should then be sent of to the microbiology lab for culturing and antibiotic susceptibility tests.

A high count of leukocytes in the urine is referred to as pyuria. (A leukocyte count over 10 per microliter is considered to indicate pyuria.) This is very accurate in identifying the disease when it's present, but it also tests positive in many people who do not have a UTI. Pyuria is usually sufficient for a diagnosis of UTI in nonhospitalized patients if other standard symptoms (or just fever in small children) are also present.

Culture

The agar plates that are used in the culture of the microbe of the urine specimen are Blood agar, MacConkey agar and Cled agar. UTI is nearly always caused by a single species of bacteria, notably E. coli.

MacConkey – Differentiate between Gram-negative by inhibiting the growth of Gram-positive bacteria.

Blood – is a differential media used to isolate fastidious organisms and detect hemolytic activity.

Cled – isolation and differentiation of urinary organisms.

If microorganisms, are isolated, they are then identified by performing biochemical tests. Normally, a gram stain is done first. Depending on their colour stain, shape and their gram category, biochemical tests are done to determine their identity. Just to name a few, a catalase or coagulase test might have to be performed.

Sensitivity

After cultivation on the agar plates, the organism is then checked for resistance to any type of antibiotics. This will assist the clinician in prescribing the right type of drug to the patient for quick recovery.


aFzAL



-Nora-

hi all.. i've uploaded a table, which contains information on faecal culture.
link: http://tinypic.com/2co6ec1

Informations are from what i learnt during SIP

Please take a look if you are interested

Friday, December 1, 2006

daphne 2 - patient kwan siew lan

Patient : Kwan Siew Lan
Complaints : diarrhea
Diagnosis : Enterocolitis

Collection and Transportation of specimens
5 g or 5 ml of fresh faecal specimen is collected into a screw-cap container using a small wooden or plastic spoon. For solid specimens, a single spoonful is satisfactory. Liquid specimens should not fill the container to more than one third to avoid spillage when the container is opened.

The specimen of choice is faeces. If faeces are not readily obtainable, a rectal swab may be submitted. The swab is passed beyond the anal sphincter, carefully rotated and withdrawn. It is then placed in a screw-cap tube.

Those portions of the faeces which contain pus, blood or mucous should be submitted for culture.

Equipments and Materials

Materials

Blood plate agar (BAP)
Salmonella-Shigella Agar modified (SS)
Campylobacter Selective medium
MacConkey Agar (MAC)
Thiosulphate-citrate bile sucrose agar (TCBS)
Selenite broth
Alkaline peptone water (APW)
Cefsulodin-Irgasan-Novobiocin (CIN) agar for Yersinia enterocolitica
Sorbitol MAC for enterohaemorrhagic E.coli
Loeffler’s methylene blue
Enterococcosel Agar with 6 microgram / ml of vancomycin

Equipment
Biological safety cabinet

Procedure

Microscopy
A wet preparation is examined for the presence of leucocytes and erythrocytes. Their presence may indicate invasive disease. This test is only done on request as its usefulness is limited.

Place a drop of liquid faeces or saline suspension of the faecal specimen on a microscope slide. Any mucous or flecks of pus or blood that may be present should be included in the suspension as these are likely to harbour disease causing organisms
Mix 1 drop of Loeffler’s methylene blue stain with the faeces specimen. Note that there must be an equal volume of faeces to stain.
Place a cover slip over it.
Wait 2 – 3 minutes for the nuclei to stain and then read the preparation under high power on (40x)
Observe for predominating numbers of white blood cells (WBCs), which indicate an invasive pathogen.

Culture
Inoculated places are O2 incubated unless otherwise indicated in the table.

All faeces are inoculated onto the following media: BAP, MAC, SS, Selenite broth and Campylobacter selective agar for the isolation of salmonella, Shigella and Campylobacter spp.

In addition to the above:
Bloody faeces are also inoculated onto Sorbitol MAC plate.
Watery faeces are plated on TCBS and inoculated onto APW to culture for Vibrio spp.

Patient 2

Patient 2 - Daphne

Principles of Faecal Culture:

A variety of bacterial and viral agents may cause diarrhea. Since faeces consist of a large number of bacteria, the potential bacterial pathogens may be overgrown by normal faecal flora when cultured on nonselective media. To enhance isolation of faecal pathogens, selective, differential and enrichment media are used. Screening of faeces should be routine for Salmonella, Shigella, Campylobacter and Vibrio spp. The role of Aeromonas and Plesiomonas spp in causing diarrhea is controversial and these are reported only when heavily grown in pure cultures. On occasions, enteropathogenic E.coli (EPEC) cause problems in neonatal outbreaks and like other diarrhoegenic E.coli, are not readily detected by current reagents and media. Where indicated, Yersinia spp, enterohaemorrhagic E.coli and C.difficile may be cultured as well. Food-handlers are also screened for Salmonella spp as is required by the licensing unit of the Ministry of Environment (Singapore).

Patient 3

Patient 3 - Alvin

Principle of testing Urine samples:

Urine specimens are submitted for culture from patients with symptoms of urinary tract infection (UTI) and from asymptomatic patients with a high risk of infection. The aetiologic agents in UTI are mostly limited to a few rapidly growing bacteria. Escherichia coli, Enterococcus spp., Klebsiella spp., Enterobacter spp., Proteus spp. and Pseudomonoas spp. They represent the majority of isolates from both hospitalized patients and outpatients.

Pyuria along the bacteriuria is also an important factor in establishing the presence of a UTI. Several guidelines for the interpretation of significant bacteriuria in a variety of patient populations have been suggested. Also, several methods for detection of bacteriuria and pyuria are available.

Exceptional situations may occur and interpretation of the clinician should take into account the presence of pyuria, the viable count on culture, symptoms and patient factors like age, presence of catheter, underlying structural abnormalities and immunologic status.

Patient 5

-Winnie-

PARTICULARS OF PATIENT

Name: Wong Wei Hong

Sex: Male

Age: 67 Years

Diagnosis: Urinnary Tract Infection (UTI)

INTRODUCTION OF UTI
A UTI is a common problem in the elderly and it is a condition where one or more structures in the urinary tract become infected after bacteria overcome its strong natural defenses. In spite of these defenses, UTIs are the most common of all infections and can occur at any time in the life of an individual. Almost 95% of cases of UTIs are caused by bacteria that typically multiply at the opening of the urethra and travel up to the bladder (known as the ascending route). Much less often, bacteria spread to the kidney from the bloodstream.
Bacterial UTIs can be classified according to localization as urethritis (urethra inflammation), cystitis (bladder infection), or pyelonephritis (kidney infection). In men, prostatitis may mimic or complicate UTI. Alternatively, UTI can be classified by the presence (symptomatic) or absence (asymptomatic) of symptoms, the frequency of its occurrence, the presence or absence of complications, and--especially important in the elderly--whether UTI is associated with catheter use.

The prevalence of UTI increases in both sexes with age; the female:male ratio is 2:1 in the elderly. The annual incidence of symptomatic bacterial UTIs is estimated to be as high as 10% in the elderly. However, because many of these infections are recurrent, the percentage of infected patients is lower.
Asymptomatic bacteriuria is a common finding in the elderly, especially in women; the estimated cumulative prevalence is 30% in women and 10% in men.

More types of urinary pathogens are isolated from elderly patients with UTI than from younger patients. The severity of any functional disability, nature of underlying illnesses, presence of anatomic or physiologic abnormalities of the genitourinary (GU) tract, and use of indwelling bladder catheters determine the types of organisms and chronicity of bacteriuria.
In the elderly, the female/male ratio of incidence in UTIs narrows, in part because elderly men often have bladder outlet obstruction due to benign prostatic hyperplasia. Additionally, the relative reduction in the incidence of UTI in elderly women may be due to a decrease in sexual activity, which can introduce bacteria into the bladder.
All UTIs in men are considered complicated whether or not these factors exist.

Source:http://www.merck.com/mrkshared/mmg/sec12/ch100/ch100a.jsp

POSSIBLE CAUSATIVE MICRO-ORGANISMS
(a) Escherichia coli

The following images show the growth of E.Coli


Source:http://images.google.com.sg/imgres?

(b) Klebsiella sp, especially K. pneumoniae, are the second most commonly isolated gram-negative, aerobic pathogens.

Below are images of K. pneumoniae



(c) Proteus mirabilis, P. vulgaris, P. inconstans, and Morganella morganii are more common in men than in women because these species tend to dominate the normal aerobic preputial flora. They are also commonly isolated from the urine of patients with calculi, because they grow best in an alkaline milieu, and from patients with urogenital tumors.

The following show the pictures of Proteus mirabilis


(d) Proteus sp, M. morganii, and Providencia sp are commonly isolated from patients who are chronically catheterized.

(e) Serratia, Enterobacter, Citrobacter, Acinetobacter, and Pseudomonas sp are isolated mainly from patients with nosocomial UTIs.

(f) Rare bacterial causes of UTIs include ureaplasma urealyticum and Mycoplasma hominis, which are generally harmless organisms.

PROCEDURES

(a) Urinalysis
Urinalysis involves a physical and chemical examination of urine. In addition, the urine is spun in a centrifuge to allow sediments containing blood cells, bacteria, and other particles to collect. This sediment is then examined under a microscope. A urinalysis, then, offers a number of valuable clues for an accurate diagnosis:
- Simply observing the urine for color and cloudiness can be important.
- Acidity is measured.
- White blood cells (leukocytes) are counted. A high count in the urine is referred to as pyuria. (A leukocyte count over 10 per microliter is considered to indicate pyuria.) This is very accurate in identifying the disease when it's present, but it also tests positive in many people who do not have a UTI. Pyuria is usually sufficient for a diagnosis of UTI in nonhospitalized patients if other standard symptoms (or just fever in small children) are also present.

Treatment can be started without the need for further tests if the following urinalysis results are present in patients with symptoms and signs of UTIs:
-
A high white cell count.
- Cloudy urine.

(b) Urine Culture
Urine culture uses a urine specimen that is placed on an agar plate, then incubated in the laboratory for 24 to 48 hours. It is then examined for the presence of bacterial growth. UTI is nearly always caused by a single species of bacteria, notably E. coli. Cultures have limitations, however. If a mix of different species is found, the test is considered contaminated and is redone. In addition, even if E. coli is identified, researchers are also looking for variants of this bacteria. Certain types may indicate a higher risk for a second infection, while others may even be protective against recurring infections. Furthermore, some organisms, such as Chlamydia, which is a sexually transmitted organism, may not be detected.

Even if bacteria are present in the culture, a diagnosis of UTI depends on symptoms and gender.
Men are considered to have an infection with a count of only 1,000.

If the presence of other micro-organisms other than E. coli are suspected, a Gram stain is used to help predict the species, which can be either gram-positive or gram-negative. Following this, the shape of the organism can be identified, be it cocci or bacilli, and this helps to determine the specific biochemical tests to be done so as to detect the precence of enzymes. These biochemical tests may include the catalase and oxidase tests. Last but not the least, an antibiotic sensitivity test is done.

Escherichia coli is gram negative and the most common cause of UTIs.

Source: http://healthydevil.studentaffairs.duke.edu/index.html> Health Topics> Urinary Tract Infection In Men









Thursday, November 30, 2006

Patient 4

Patient 4: Ng Ming En
Complaints: severe vomiting, diarrhea, abdominal cramps
Diagnosis: Food Poisoning


Findings:


Test to be done: Stool culture
Abnormal results may indicate an intestinal infection.

Other stool tests such as gram stain of stool, and stool ova and parasites exam are to be done in addition to the culture.

1. Gram stain: Abnormal results would mean the presence ofintestinal infection. Stool cultures and more sophisticated tests can help to diagnose the cause of the infection.

2. Stool ova and parasites exam
Stool ova and parasites exam is an analysis of stool to check for the presence of a parasite or worm-like infection of the intestine. A small smear of stool is placed on a microscope slide and examined.

Firstly, before culturing, observe the texture of the stool; watery, bloody or normal? Then, culture on plate. gram staining is to be done. Then observe the morphology. If it is a –ve baccili, proceed to oxidase test. If it is oxidase –ve, proceed to do these 5 tubes: KG,SC, Urea, MOT, IND.

Possible microorganisms that can cause food poisoning:
S aureus
E. coli enteritis
Salmonella
Campylobacter
Cholera
Botulism
Listeria
Bacillus cereus
Yersinia

FYI:
Yersinia is a non-lactose fermenter, urease +ve, oxidase –ve, and non-motile. Diarrhea is watery to bloody.
Campylobacter is motile, and oxidase –ve. Selective media are needed, with anaerobic incubation.
Vibrio cholere is oxidase +ve, and grow at high pH(8.5-9.5).
V. parahaemolyticus is able to grow well on BP. And stool is watery to bloody.

Posted by Nora Binte Ahmad